Protein ZmOrphan328 | |
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Information | |
Orphans Name: | ZmOrphan328 |
Species: | Maize |
Orphans Family: | Orphans |
Gene Name(Synonym): | PRH7 |
Uniprot ID: | B6TY17 |
Subgenome: | 2 |
ZmOrphan328 is a protein in the Orphans family.
Overview of domains present in v5 transcripts | |
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PF00481 | |
Zm00001eb098220_T001 |
Gene ID | Type | MEME Logo | Sequence | FIMO | Position |
---|---|---|---|---|---|
Zm00001d005609 | DAPseq | sequence | fimo | position | |
Zm00001d005609 | DAPseq | sequence | fimo | position | |
Zm00001d005609 | ChIPseq | sequence | fimo | position | |
Zm00001d005609 | PChIPseq | sequence | fimo | position |
MSMAQVCCDSAVTAAPVAGPEAEARARARAERRRRAAEAGRWKHAAAAGTAAADATRKRSLEAGELLVARKHGAASVAGR
RREMEDAVSVRESFAAEGDADGGGRRDFYGVFDGHGCSHVAEACRDRMHDLLAEELAAADGSGSAATWTAAMERSFARMD
AEAMSAGGSAACRCDPHKCDHVGSTAVVAVVEERRVVVANCGDSRALLCRGGGAPPLPLSSDHKPDRPDELERIEAAGGR
VIFWEGARVLGVLAMSRAIGDGYLKPYVSSVPEVTVTDRADADECLILASDGLWDVVSNEAACEVARACLRRGRARWCAE
AAALLTKLALARRSSDNVSVVVVDLRRRDH
MSMAQVCCDSAVTAAPVAGPEAEARARARAERRRRAAEAGRWKHAAAAGTAAADATRKRSLEAGELLVARKHGAASVAGR
RREMEDAVSVRESFAAEGDADGGGRRDFYGVFDGHGCSHVAEACRDRMHDLLAEELAAADGSGSAATWTAAMERSFARMD
AEAMSAGGSAACRCDPHKCDHVGSTAVVAVVEERRVVVANCGDSRALLCRGGGAPPLPLSSDHKPDRPDELERIEAAGGR
VIFWEGARVLGVLAMSRAIGDGYLKPYVSSVPEVTVTDRADADECLILASDGLWDVVSNEAACEVARACLRRGRARWCAE
AAALLTKLALARRSSDNVSVVVVDLRRRDH
MSMAQVCCDSAVTAAPVAGPEAEARARARAERRRRAAEAGRWKHAAAAGTAAADATRKRSLEAGELLVARKHGAASVAGR
RREMEDAVSVRESFAAEGDADGGGRRDFYGVFDGHGCSHVAEACRDRMHDLLAEELAAADGSGSAATWTAAMERSFARMD
AEAMSAGGSAACRCDPHKCDHVGSTAVVAVVEERRVVVANCGDSRALLCRGGGAPPLPLSSDHKPDRPDELERIEAAGGR
VIFWEGARVLGVLAMSRAIGDGYLKPYVSSVPEVTVTDRADADECLILASDGLWDVVSNEAACEVARACLRRGRARWCAE
AAALLTKLALARRSSDNVSVVVVDLRRRDH
MSMAQVCCDSAVTAAPVAGPEAEARARARAERRRRAAEAGRWKHAAAAGTAAADATRKRSLEAGELLVARKHGAASVAGR
RREMEDAVSVRESFAAEGDADGGGRRDFYGVFDGHGCSHVAEACRDRMHDLLAEELAAADGSGSAATWTAAMERSFARMD
AEAMSAGGSAACRCDPHKCDHVGSTAVVAVVEERRVVVANCGDSRALLCRGGGAPPLPLSSDHKPDRPDELERIEAAGGR
VIFWEGARVLGVLAMSRAIGDGYLKPYVSSVPEVTVTDRADADECLILASDGLWDVVSNEAACEVARACLRRGRARWCAE
AAALLTKLALARRSSDNVSVVVVDLRRRDH
MSMAQVCCDSAVTAAPVAGPEAEARARARAERRRRAAEAGRWKHAAAAGTAAADATRKRSLEAGELLVARKHGAASVAGR
RREMEDAVSVRESFAAEGDADGGGRRDFYGVFDGHGCSHVAEACRDRMHDLLAEELAAADGSGSAATWTAAMERSFARMD
AEAMSAGGSAACRCDPHKCDHVGSTAVVAVVEERRVVVANCGDSRALLCRGGGAPPLPLSSDHKPDRPDELERIEAAGGR
VIFWEGARVLGVLAMSRAIGDGYLKPYVSSVPEVTVTDRADADECLILASDGLWDVVSNEAACEVARACLRRGRARWCAE
AAALLTKLALARRSSDNVSVVVVDLRRRDH
Secondary Structure Color Code | |
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BEND | region with high backbone curvature without specific hydrogen bonding |
HELX_LH_PP_P | left-handed polyproline helix |
HELX_RH_3T_P | right-handed 3-10 helix |
HELX_RH_AL_P | right-handed alpha helix |
HELX_RH_PI_P | right-handed pi helix |
STRN | beta strand |
TURN_TY1_P | type I turn |
UNDETERMINED | no data available |
Domains Present | |
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PF00481 |
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Hover here to show all domains |
CACTGGACGTCTGGACCCTCCTCCT...
CACTGGACGTCTGGACCCTCCTCCTCTCAACTGTTCTCTCGCCGCCGTTCTAGTTCCGCTTTGCTTGAGGTGCACGTGGCGGTGGAAGCTTCCCGGGCGGTGGCGGTTGTTGGTTCATGTCGATGGCGCAGGTGTGCTGCGACTCGGCCGTAACGGCGGCACCGGTGGCCGGGCCGGAGGCGGAGGCGAGGGCCAGGGCGCGCGCCGAGAGGCGCCGCCGGGCCGCGGAGGCCGGGAGGTGGAAGCACGCGGCGGCTGCTGGCACGGCAGCCGCAGATGCCACGAGGAAGCGGAGCCTCGAGGCCGGGGAGCTGCTCGTGGCGCGGAAGCACGGGGCCGCGTCGGTGGCCGGCCGCCGGAGGGAGATGGAGGACGCCGTGTCCGTGCGCGAGTCCTTCGCCGCGGAGGGCGACGCCGACGGCGGCGGGAGGCGCGACTTCTACGGGGTGTTCGACGGCCACGGCTGCTCGCACGTGGCCGAGGCGTGCCGGGACCGGATGCACGACCTGCTCGCCGAGGAGCTCGCCGCTGCCGACGGTTCCGGCTCCGCGGCGACCTGGACCGCCGCGATGGAACGCAGCTTCGCGCGGATGGACGCCGAGGCGATGTCGGCCGGCGGGAGCGCCGCCTGCCGCTGCGACCCGCACAAGTGCGACCACGTGGGCTCCACCGCCGTGGTGGCCGTCGTGGAGGAGCGCCGCGTCGTGGTGGCCAACTGCGGCGACAGCCGCGCGCTGCTGTGCCGCGGGGGCGGCGCGCCGCCGCTGCCGCTGTCGTCGGACCACAAGCCCGACCGCCCCGACGAGCTGGAGCGGATCGAGGCCGCGGGCGGCCGCGTCATCTTCTGGGAGGGCGCGCGCGTGCTGGGCGTCCTCGCCATGTCCCGCGCCATCGGGGACGGCTACCTCAAGCCGTACGTCTCGTCCGTGCCCGAGGTCACGGTCACCGACCGCGCCGACGCCGACGAGTGCCTCATCCTCGCCAGCGACGGCCTCTGGGACGTGGTTAGCAACGAGGCCGCGTGCGAGGTGGCGCGCGCCTGCCTCCGCCGGGGGCGGGCCAGGTGGTGCGCCGAGGCCGCCGCGCTGCTCACCAAGCTGGCCCTCGCCAGGCGCAGCTCCGACAACGTCTCGGTGGTCGTCGTCGATCTCCGGAGGAGGGATCACTAGCTAGCTCTGAGCAGTTAGTACTAATACAGTAGTAGGATGGTGCACAAAAGGATCTCGCGGGTGTGTGCTAATTGTTTTTCTGTCTTTCTCGTCAAAAGTTATTTTTTGCTGCTCTCCCTGAATCAAAAAGTTCAGAGGAGCCCTTAGATTAATTATTGTGGTGGAACCGGAATTTGATCCGGGTACCATTTGGGATGAATGAAACCTTGCATAG
MSMAQVCCDSAVTAAPVAGPEAEARARARAERRRRAAEAGRWKHAAAAGTAAADATRKRSLEAGELLVARKHGAASVAGR
RREMEDAVSVRESFAAEGDADGGGRRDFYGVFDGHGCSHVAEACRDRMHDLLAEELAAADGSGSAATWTAAMERSFARMD
AEAMSAGGSAACRCDPHKCDHVGSTAVVAVVEERRVVVANCGDSRALLCRGGGAPPLPLSSDHKPDRPDELERIEAAGGR
VIFWEGARVLGVLAMSRAIGDGYLKPYVSSVPEVTVTDRADADECLILASDGLWDVVSNEAACEVARACLRRGRARWCAE
AAALLTKLALARRSSDNVSVVVVDLRRRDH
CCCCCCCCCGCATCACGGCCGAACG...
CCCCCCCCCGCATCACGGCCGAACGCTTTAAAAGGTGCGCCCGGCACCACTGGACGTCTGGACCCTCCTCCTCTCAACTGTTCTCTCGCCGCCGTTCTAGTTCCGCTTTGCTTGAGGTGCACGTGGCGGTGGAAGCTTCCCGGGCGGTGGCGGTTGTTGGTTCATGTCGATGGCGCAGGTGTGCTGCGACTCGGCCGTAACGGCGGCACCGGTGGCCGGGCCGGAGGCGGAGGCGAGGGCCAGGGCGCGCGCCGAGAGGCGCCGCCGGGCCGCGGAGGCCGGGAGGTGGAAGCACGCGGCGGCTGCTGGCACGGCAGCCGCAGATGCCACGAGGAAGCGGAGCCTCGAGGCCGGGGAGCTGCTCGTGGCGCGGAAGCACGGGGCCGCGTCGGTGGCCGGCCGCCGGAGGGAGATGGAGGACGCCGTGTCCGTGCGCGAGTCCTTCGCCGCGGAGGGCGACGCCGACGGCGGCGGGAGGCGCGACTTCTACGGGGTGTTCGACGGCCACGGCTGCTCGCACGTGGCCGAGGCGTGCCGGGACCGGATGCACGACCTGCTCGCCGAGGAGCTCGCCGCTGCCGACGGTTCCGGCTCCGCGGCGACCTGGACCGCCGCGATGGAACGCAGCTTCGCGCGGATGGACGCCGAGGCGATGTCGGCCGGCGGGAGCGCCGCCTGCCGCTGCGACCCGCACAAGTGCGACCACGTGGGCTCCACCGCCGTGGTGGCCGTCGTGGAGGAGCGCCGCGTCGTGGTGGCCAACTGCGGCGACAGCCGCGCGCTGCTGTGCCGCGGGGGCGGCGCGCCGCCGCTGCCGCTGTCGTCGGACCACAAGCCCGACCGCCCCGACGAGCTGGAGCGGATCGAGGCCGCGGGCGGCCGCGTCATCTTCTGGGAGGGCGCGCGCGTGCTGGGCGTCCTCGCCATGTCCCGCGCCATCGGGGACGGCTACCTCAAGCCGTACGTCTCGTCCGTGCCCGAGGTCACGGTCACCGACCGCGCCGACGCCGACGAGTGCCTCATCCTCGCCAGCGACGGCCTCTGGGACGTGGTTAGCAACGAGGCCGCGTGCGAGGTGGCGCGCGCCTGCCTCCGCCGGGGGCGGGCCAGGTGGTGCGCCGAGGCCGCCGCGCTGCTCACCAAGCTGGCCCTCGCCAGGCGCAGCTCCGACAACGTCTCGGTGGTCGTCGTCGATCTCCGGAGGAGGGATCACTAGCTAGCTCTGAGCAGTTAGTACTAATACAGTAGTAGGATGGTGCACAAAAGGATCTCGCGGGTGTGTGCTAATTGTTTTTCTGTCTTTCTCGTCAAAAGTTATTTTTTGCTGCTCTCCCTGAATCAAAAAGTTCAGAGGAGCCCTTAGATTAATTATTGTGGTGGAACCGGAATTTGATCCGGGTACCATTTGGGATGAA
MSMAQVCCDSAVTAAPVAGPEAEARARARAERRRRAAEAGRWKHAAAAGTAAADATRKRSLEAGELLVARKHGAASVAGR
RREMEDAVSVRESFAAEGDADGGGRRDFYGVFDGHGCSHVAEACRDRMHDLLAEELAAADGSGSAATWTAAMERSFARMD
AEAMSAGGSAACRCDPHKCDHVGSTAVVAVVEERRVVVANCGDSRALLCRGGGAPPLPLSSDHKPDRPDELERIEAAGGR
VIFWEGARVLGVLAMSRAIGDGYLKPYVSSVPEVTVTDRADADECLILASDGLWDVVSNEAACEVARACLRRGRARWCAE
AAALLTKLALARRSSDNVSVVVVDLRRRDH
ATGTCGATGGCGCAGGTGTGCTGCG...
ATGTCGATGGCGCAGGTGTGCTGCGACTCGGCCGTAACGGCGGCACCGGTGGCCGGGCCGGAGGCGGAGGCGAGGGCCAGGGCGCGCGCCGAGAGGCGCCGCCGGGCCGCGGAGGCCGGGAGGTGGAAGCACGCGGCGGCTGCTGGCACGGCAGCCGCAGATGCCACGAGGAAGCGGAGCCTCGAGGCCGGGGAGCTGCTCGTGGCGCGGAAGCACGGGGCCGCGTCGGTGGCCGGCCGCCGGAGGGAGATGGAGGACGCCGTGTCCGTGCGCGAGTCCTTCGCCGCGGAGGGCGACGCCGACGGCGGCGGGAGGCGCGACTTCTACGGGGTGTTCGACGGCCACGGCTGCTCGCACGTGGCCGAGGCGTGCCGGGACCGGATGCACGACCTGCTCGCCGAGGAGCTCGCCGCTGCCGACGGTTCCGGCTCCGCGGCGACCTGGACCGCCGCGATGGAACGCAGCTTCGCGCGGATGGACGCCGAGGCGATGTCGGCCGGCGGGAGCGCCGCCTGCCGCTGCGACCCGCACAAGTGCGACCACGTGGGCTCCACCGCCGTGGTGGCCGTCGTGGAGGAGCGCCGCGTCGTGGTGGCCAACTGCGGCGACAGCCGCGCGCTGCTGTGCCGCGGGGGCGGCGCGCCGCCGCTGCCGCTGTCGTCGGACCACAAGCCCGACCGCCCCGACGAGCTGGAGCGGATCGAGGCCGCGGGCGGCCGCGTCATCTTCTGGGAGGGCGCGCGCGTGCTGGGCGTCCTCGCCATGTCCCGCGCCATCGGGGACGGCTACCTCAAGCCGTACGTCTCGTCCGTGCCCGAGGTCACGGTCACCGACCGCGCCGACGCCGACGAGTGCCTCATCCTCGCCAGCGACGGCCTCTGGGACGTGGTTAGCAACGAGGCCGCGTGCGAGGTGGCGCGCGCCTGCCTCCGCCGGGGGCGGGCCAGGTGGTGCGCCGAGGCCGCCGCGCTGCTCACCAAGCTGGCCCTCGCCAGGCGCAGCTCCGACAACGTCTCGGTGGTCGTCGTCGATCTCCGGAGGAGGGATCACTAG
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